Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcgttctctaatcttccattggtcgtgattatgtttgtgattgttttggaatgattatagtagagaagatgatgttttgggtgataattattg...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G60410.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G60410.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G15880.1 (Glycine max), 5'ss of exon 3
GAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcgttctctaatcttccattggtcgtgattatgtttgtgattgttttggaatgattatagtagagaagatgatgttttgggtgataat-tattg----
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GAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgag-ataataaaactattacctact--ccgcctttgttattgtgaggctttttctatgatgaaaccttgaacgctagtact--gactgacaccctgttgaata
upper sequence: AT5G60410.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 3
GAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcgttctctaatcttccattggtcgtgattatgtttgtgattgttttggaatgattatagtagagaagatgatgttttgggtgataat-tattg--
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GAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgag-ataataaaatactattacctagtctgcctttgttattgtgaggctttttctatgatgaaaccttgaacgct--tgtactgactgacaccctgttgaa
upper sequence: AT5G60410.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 5'ss of exon 2
GAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgt-tagtatcgttctctaatcttccattggtcgtgattatgtttgtgattgttttggaatgattatagtagagaagatgatgttttgggtgataattattg
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GACAAATTGGCATATTTTCGAATAAAGGAGCTCAAGGACGTACTGACTCAACTTGGTCTTTCAAAGCAGGGAAAGAAGCAGgtacgatatctgaaatattgctttcgttgcctgtggcttcattcatctttctatatatatatatatttttaaatcagaaacaaactagttcattgatatg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116462446|gb|EG505038.1|EG505038EST: TCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAG GAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG
genomic: TCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcg ... tcttgtgcagGAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcgttctctaatcttccattggtcgtgattatgtttgtgattgttttggaatgattatagtagagaagatgatgttttgggtgataattattg
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC