1 5' 3' | 2 5' 3' | 3 5' 3' |
TAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGATGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttttaagtcttgttcatattttggttctggttttttaaagagcaatcttatattcagtgatcttacattgagttcttaaattgtgcag
species | Arabidopsis thaliana |
transcript | AT5G59850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|124774597|gb|EH864726.1|EH864726
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGEST: gi|125027932|gb|EL100201.1|EL100201
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGG
EST: TCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|164206160|gb|ES175027.1|ES175027
genomic: TCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTEST: gi|164031367|gb|ES193570.1|ES193570
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCT
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGT-CTTACGEST: gi|86052270|gb|DR348027.1|DR348027
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACG
EST: GAGTTAAGGAGATTGANGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|164215327|gb|ES072448.1|ES072448
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: TCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|164230170|gb|ES198507.1|ES198507
genomic: TCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGEST: gi|163995610|gb|ES193370.1|ES193370
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTG
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTEST: gi|86081708|gb|DR377465.1|DR377465
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCT
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|164066042|gb|ES038026.1|ES038026
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCEST: gi|125234215|gb|EL248300.1|EL248300
genomic: GAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTC
EST: TTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAEST: gi|164072277|gb|ES177950.1|ES177950
genomic: TTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
EST: GGCTGGACCGCTCGTCTTCTTCCTTCCAGACAG TTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
genomic: GGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttt ... aattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGATGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGgtctgtcttttaagtcttgttcatattttggttctggttttttaaagagcaatcttatattcagtgatcttacattgagttcttaaattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA