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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGgttagttttctctctatcggttttgatcggggaaggattcaaaggaatatgaatagaagacagacgtttgaatggtttacttatatttgtcctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G59300.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077987|gb|DR373744.1|DR373744
EST:     GAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACG                         TTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATG
genomic: GAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGgttagttttc ... tgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATG
EST: gi|86081449|gb|DR377206.1|DR377206
EST:     GAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACG                         TTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATG
genomic: GAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGgttagttttc ... tgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATG