1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTCATTGATGAGGTAGATGCCATCGCTACTGCTAGGTTTGATGCTCAAACAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaaataatgaattttagttgtaattcagatcttatgttgtagaataatggattttagttgtgtccttaacttattgtgttgaattcgatgtag
species | Arabidopsis thaliana |
transcript | AT5G58290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTATTCTCATGGAGCTTCTTAATCAG ATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACEST: gi|164145427|gb|ES040431.1|ES040431
genomic: CGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaa ... ttcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAAC
EST: AGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAG ATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACEST: gi|116455275|gb|EG497867.1|EG497867
genomic: AGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaa ... ttcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAAC
EST: CAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAG ATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACEST: gi|164007736|gb|ES207362.1|ES207362
genomic: CAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaa ... ttcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAAC
EST: CAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAG ATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCEST: gi|86084279|gb|DR380038.1|DR380038
genomic: CAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaa ... ttcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGC
EST: CTCATGGAGCTTCTTAATCAG ATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAAC
genomic: CTCATGGAGCTTCTTAATCAGgtgagaacaa ... ttcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCATTGATGAGGTAGATGCCATCGCTACTGCTAGGTTTGATGCTCAAACAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaaataatgaattttagttgtaattcagatcttatgttgtagaataatggattttagttgtgtccttaacttattgtgttgaattcgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT