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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTGTGCATCAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACAAGgtttgtctggtcatatgcattctgattacctggaaggcataactctatggtttctcatatctaatggaactatcttctgtcatcatttttag

Basic information

species Arabidopsis thaliana
transcript AT5G57590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv11s0052g01390.t01 (Vitis vinifera), 5'ss of exon 3
AGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTGTGCATCAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACAAGgtttgtctggtcat-atgcattctgatta-cctggaaggcataactctatgg---tttctcatatct-----aatggaactatcttctgtcatcatttttag
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AGATATTTTCTGGTGGCCATTTACTCAGCACAAACTTGTACCTGAAGAAACTGTTACAGTAATTGACTCACGCTGTGGTGAAAATTTTTCTGTCCACAAGgtctgtttcgtaattacttgtattagttagtctgtcttttgtaatcccttggaaactgtccatgactggaagaatggaagggt-ttaagttgttgcacttg-