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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTgtaggttcttattattgatgctgaaattgtttggatgttttggggttttaattagggtttttgtttgatttag

Basic information

species Arabidopsis thaliana
transcript AT5G57410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57410.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 3
TGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTgtaggttcttattattgatgc-tgaaattgtttggatgttt---tggggttttaattagggtttttgtttgatttag-------
 ||| ||| ||  ||||||||||||||| | ||||||||||| |||||| | || || || ||||| || |||||||||||||| ||  |    ||||| ||  |   |  || ||  ||  |    |||| ||| | |     ||||||||| |||   |  ||| |  | ||| |       
CGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTCGCCGGCGATCCGgtgcggagtggttgtttgtggattgttttgtgtggttttgggagtggggttttgattgttgcgtttttgcgcttttggtggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047425|gb|DR343180.1|DR343180
EST:     TGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCT                         GTTTCTATATCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGA
genomic: TGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTgtaggttctt ... tttgatttagGTTTCTATATCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGA
EST: gi|164033384|gb|ES018072.1|ES018072
EST:     TGGTTACATTTGGATTTCCCGCCTCACTCGATCTCTTTTCGAATGATCCT                         GTTTCTATATCAAGGAC
genomic: TGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTgtaggttctt ... tttgatttagGTTTCTATATCAAGGAC