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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGTCTTACTCTTACTAGAAAAGATTACAGAAAAACTAGGCTAGAACAATATAAAAACTATGAAAATATACCCAATTCTGGTGATGAATCTGCCAAGgtgaattacatttcatgtttctttaaggttatttattagtagatgcacctatgttgctcttttctcactctagtcttgtctattggaaccag

Basic information

species Arabidopsis thaliana
transcript AT5G56190.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 2
GGATAGTCTTACTCTTACTAGAAAAGATTACAGAAAAACTAGGCTAGAACAATATAAAAACTATGAAAATATACCCAATTCTGGTGATGAATCTGCCAAGgtgaattacatttcatgtttctttaaggttatttattagtagatgcacctatgtt--gctcttttctcactctagtcttgtctattggaaccag
||| || |||||  | |||||| |  | |||||  |||||||| |||||||||| |||||||||||||| || ||    ||||| ||||  || || ||||| || | |  ||||| |||| ||  | ||     ||     ||||   |||  |     | ||  || | |   | || || || | ||  ||
GGAAAGGCTTACCATCACTAGAGAGAAGTACAGGCAAACTAGGGTAGAACAATACAAAAACTATGAAAACATTCCTCGATCTGGAGATGGTTCAGCAAAGgtaaagt-ctcttcatctttccttttgatttccccttttcccatgctggtattatcaaaaccttaatctcacccatttt-tcaatggtaaatag