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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTTCAGTCAGCCCTTGTTCTCACATTGGTGGTCACAAATACACTGGAGATGTTATCATCTATGGATTAAATATCAACCAGAGAGTCACAGGACACTGgtaagtaaactaaggctagctttggagtaaaaagatttgagtgtgcaaccataaagagttctatgcgagttttaacttattaagtaattcttgtctcttag

Basic information

species Arabidopsis thaliana
transcript AT5G55900.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55900.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ32269 (Selaginella moellendorffii), 5'ss of exon 3
AAGTTTCAGTCAGCCCTTGTTCTCACATTGGTGGTCACAAATACACTGGAGATGTTATCATCTATG--GATTAAATATCAACCAGAG-AGTCACAGGACACTGgtaagtaa--actaaggctagctttggagtaaaaa-gatttgagtgtgcaaccataaagagttctatgcgagttttaacttattaagtaattcttgtctcttag
   |  ||||||   |||| || ||||||||||||||||||| | ||||  ||||||||||||| |  | |     |  |  | |   |||| | || |||||||||||    ||| |   |  ||| |    |||   || | |         | |   ||                                             
---TCACAGTCAAGGCTTGCTCCCACATTGGTGGTCACAAATTCGCTGGCAATGTTATCATCTACGCCGCTAGCGGAGGAGGCGGTCCAGTCTCGGGGCACTGgtaagtcctcactcactttttcttcgtttcaaagctgactcgttctctttgcaacgcag---------------------------------------------