1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTGATGAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcactctctgtaccccattctcttttactgttttccgtttttcaaagttgtatgatttccttaaccgagaatcttcaattttacag
species | Arabidopsis thaliana |
transcript | AT5G55160.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATEST: gi|164126265|gb|ES092834.1|ES092834
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAAT
EST: ATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAEST: gi|163979819|gb|ES135192.1|ES135192
genomic: ATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCA
EST: CGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGG
genomic: CGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGATGAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcactctctgtaccccattctcttttactgttttccgtttttcaaagttgtatgatttccttaaccgagaatcttcaattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG