1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCTCTATCTGATGATTTTCTTGACTGTACAAAATCTAGGATCAGCTATGGCTGATGTTGTGATTGATGCTATGATAGCTGAGGCAGTAAGACTTGAAAAgtaagattctatgttctttggttttggatccgcacttagatcatagtttaatgcacttagttgattagttgagttattcttttattgtttatcag
species | Arabidopsis thaliana |
transcript | AT5G54860.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGTAAGACTTGAAAA GGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTGCAATGGCTGTEST: gi|116482509|gb|EG525101.1|EG525101
genomic: CAGTAAGACTTGAAAAgtaagattct ... tgtttatcagGGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTGCAATGGCTGT
EST: GCTGATGTTGTGATTGATGCTATGATAGCTGAGGCAGTAAGACTTGAAAA GGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTGCAATGGCTGTEST: gi|125142025|gb|EL179526.1|EL179526
genomic: GCTGATGTTGTGATTGATGCTATGATAGCTGAGGCAGTAAGACTTGAAAAgtaagattct ... tgtttatcagGGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTGCAATGGCTGT
EST: CTGATGTTGTGATTGTATGCTATGATAGCTGAGGCAGTAAGACTTGAAAA GGCTTCGTTTGCTGGAGATCTTCAGT
genomic: CTGATGTTGTGATTG-ATGCTATGATAGCTGAGGCAGTAAGACTTGAAAAgtaagattct ... tgtttatcagGGCTTCGTTTGCTGGAGATCTTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCTATCTGATGATTTTCTTGACTGTACAAAATCTAGGATCAGCTATGGCTGATGTTGTGATTGATGCTATGATAGCTGAGGCAGTAAGACTTGAAAAgtaagattctatgttctttggttttggatccgcacttagatcatagtttaatgcacttagttgattagttgagttattcttttattgtttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA