1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTCACAGACAGAGTATCAGGATATTCCAAAGGGTTTGGATTTGTTAGATATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGgtactattcattctaatatccatttctcgattaccatatcataatctattaagagagatttacactgacaattaccaaacggctaatctcctctctgtgcttctctgcag
species | Arabidopsis thaliana |
transcript | AT5G54580.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAG TTTCTTGACGGTTGGGTCATATTCGEST: gi|86076453|gb|DR372210.1|DR372210
genomic: ATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGgtactattca ... ttctctgcagTTTCTTGACGGTTGGGTCATATTCG
EST: ATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGATGGGAAG TTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAGAGCAAEST: gi|124938339|gb|EL014979.1|EL014979
genomic: ATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGgtactattca ... ttctctgcagTTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAGAGCAA
EST: CCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAG TTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAGAGCAA
genomic: CCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGgtactattca ... ttctctgcagTTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAGAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCACAGACAGAGTATCAGGATATTCCAAAGGGTTTGGATTTGTTAGATATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGgtactattcattctaatatccatttctcgattaccatatcataatctattaagagagatttacactgacaattaccaaacggctaatctcctctctgtgcttctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA