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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTTGCCTTAAGGCTATGGCATGTGTACCTGAGGATGATGCTAAGTGTCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagactttgttttcttttcttgtcaagaagctaccctattttcttagatccgatctcttattttggatcttgttcttaattggatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G53120.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53120.4 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 2
TCTTGTTGCCTTAAGGCTATGGCATGTGTACCTGAGGATGATGCTAAGTGTCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagactttgttttcttttcttgtcaagaagctaccctattttcttagatccgatctcttattttggatcttgt-------tcttaattggatgcag-----------------------------------------------
||||||||||| || |||| ||| |  |  |||||| ||||||| || || || || |||||||||||||||||||| || ||||||||  |  |||||||| |    |   ||||| || |||       | |     |||    ||      |    ||   |||||| || |       | | |||||| || |                                                
TCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcat-tatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattgg-tgtaaatggatcttttttttacttcctttcttccttgtcttttttattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073008|gb|DR368765.1|DR368765
EST:     TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG                         GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: gi|86043712|gb|DR339467.1|DR339467
EST:     TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG                         GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: gi|47831735|gb|CK121419.1|CK121419
EST:     TTTCGGAACCTCACCCTCGCTCTG                         GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
genomic: TTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: gi|86043704|gb|DR339459.1|DR339459
EST:     TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG                         GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: gi|125233004|gb|EL247089.1|EL247089
EST:     TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG                         GGAAAAAAGGCGGCAAAG
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAG