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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGgttttaataccatcgttaaccaacgctcttaacgttcttcattccatatagttattattgatttacaaaattttgctaacgattatggctttatctttttag

Basic information

species Arabidopsis thaliana
transcript AT5G52570.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G30230.2 (Glycine max), 5'ss of exon 5
GGCTTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGgt----------tttaataccat-cgttaaccaacgctctt---------aacgt-tcttcattccatatagttattattgattt-------acaaaattttgctaacgatt--atggctttatctttttag-------------
||| |||||||| || ||||||||| | || || |||||||||||||| ||||||||||||||||| || ||| || |||  || || || |||||||| ||          || | |  |||  ||| | ||| ||   |         || || |  |  ||   | |  || ||  || ||        | |  || |   | | |||   ||| | ||   |||||               
GGCCTACATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAAgtaattatatttttcattttcatatgtttagcaaagcaaattagagaaggaaggtgttatgcttttgtgtgtttgtttctgtttcttgtggaataggatctgaattatgatctcatgaccttgaatttttgtggtctgtattcag

upper sequence: AT5G52570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G37560.1 (Glycine max), 5'ss of exon 5
GGCTTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGgttttaata-------ccatcgttaaccaacgc----tcttaacgttcttcattccatatagttattattgattt-------acaaaattttgctaacga--ttatggctttatctttttag-------------
||| |||||||| || ||||||||| | || || |||||||||||||| ||||||||||||||||| || ||| |  |||  || || || |||||||| ||  | |||       |  |  || |  ||  |    |   || |       ||     |  || ||  || ||        | |  || |   | | ||  ||||| | ||   |||||               
GGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataaacttcacatttatttagtaaaacaaattagaaaaggaacgtgttttgggtgtttgtttctgtttcttgtggaataggatctgaattatgatcttatgaccttgaatttttgttgtctgtattcag

upper sequence: AT5G52570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G24530.1 (Glycine max), 5'ss of exon 5
GGCTTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGgttttaataccatcgttaaccaacgctcttaacgttcttcattccatatagttattattgatttacaaaattttgctaacgattatggctttatctttttag-----
||| |||||||| || ||||||||| | || |||||||||||||| || || ||||| |||||||| || || ||  ||| ||| ||| | |||||||| ||  |  |  |||  | | |  |      |||| || | ||   || |   |||  ||  || || || |   || |   | |  |   ||||  |  | ||     
GGCCTACATGTTTGTACACGATGGATTGGTTCACAAGAGATTCCCGGTGGGCCCCATAGCCAACGTGCCCTATCTCAGAAGGGTGGCCTCTGCTCACCAAgtaat--tttcattatcatc--atttggataacattatgcaa--caaaattttaaaatatatatataagaaaatgttcttggt-gtatgtttaattagtaagactga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078127|gb|DR373884.1|DR373884
EST:     GTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAG                         CTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGA
genomic: GTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGgttttaatac ... atctttttagCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGA