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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCTTTAGATGATTCCAACCAGCGTCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAGgtacatctaatggtcatagtattgtctgtcgtacagagtaatatcaccacacagatgtttttttcggagtctgattttttctcttattaatag

Basic information

species Arabidopsis thaliana
transcript AT5G51150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 3
AGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCTTTAGATGATTCCAACCAGCGTCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAGgtacatc----taatggtcatagtattgtctgtcgtacagagtaatatcaccacacagatgtt-----tttttcgg--agtctgattttttctcttattaatag----------------------
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AATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAGgtaaattaatatattttttattgcctcaattacttttcaaagctaaattgaatcgcaagagttaggggtttgctggtcatgctaatagggttcctttttctttttcctttttcctcccctcatcag