Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGATGAAAATGCTTATGTAGGCAAAACCGTAGCTGAGATTTGTTGTGATTCACTTAAGGATTTTAACCCTATGGTTCATGTTTCAATAGAGAAAGgttactcctcctttcttcatttctctctaattttagtagaaacaaatgattttagtaacatcgagtctatgtcttcaatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G50580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01440.2 (Glycine max), 5'ss of exon 3
CTTCCTGATGAAAATGCTTATGTAGGCAAAACCGTAGCTGAGATTTGTTGTGATTCACTTAAGGATTTTAACCCTATGGTTCATGTTTCAATAGAGAAAGgttactcct-----cctttcttcatttctctctaattttagtagaaacaaatgatttta-gtaaca-tcgagtctatgtcttcaatttcag---------------------------
| ||||||||| ||||| |||   || || ||| | | |||| |||||||| |||||||||| || || ||||||||||||| |||||| || ||||||||||  |  |     | | |   | | | | |||  |||  |      ||  || ||| | ||     | ||   ||||| ||    ||                              
CCTCCTGATGAGAATGCGTATAGTGGAAAGACCCTTGGTGAGCTTTGTTGTAATTCACTTAAAGACTTCAACCCTATGGTTCGTGTTTCCATTGAGAAAGgtttttgttttgaacttgttcccttatttgtctggtttctgcttctgcat-tgctttcacgtggttcttgacattatgttttgtggttggtcttttctgttgttcgtctttgcttcag