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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTTATTTGAAGCTTGTCGAAGAATGGCTGCTCGTCGTGTTGATGCGTTATTGCTGACTGATTCTAATGCATTACTTTGTGGGATCCTAACAGATAGGgtatacatgttttcatgaacaggattctaaatgcaaactggacttttcacttatgtttttttttttatctcttttgttttttttaag

Basic information

species Arabidopsis thaliana
transcript AT5G50530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 3
AACTTTATTTGAAGCTTGTCGAAGAATGGCTGCTCGTCGTGTTGATGCGTTATTGCTGACTGATTCTAATGCATTACTTTGTGGGATCCTAACAGATAGGgtat-------acatgttttcatgaac-----aggattctaaatgcaaactggacttttcacttatgtttttttttttatctcttttgttttttttaag-----------------------
|||| | | ||||||||| ||  | |||||||| ||| | ||||||||  ||||||| |||||||||||||| || || ||||| ||||| ||||| | |||||       || ||||||  | | |     |  |  |  ||   ||| | || | ||  | ||  ||| |    || |  |||   |   ||| | |                       
AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtctttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag

upper sequence: AT5G50530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
AACTTTATTTGAAGCTTGTCGAAGAATGGCTGCTCGTCGTGTTGATGCGTTATTGCTGACTGATTCTAATGCATTACTTTGTGGGATCCTAACAGATAGGgtat-acatg---ttttcatgaacaggattctaaatgcaaa-----ctggacttttcacttatgtttttttttttatctcttttgttttttttaag----------------------
|| | | | ||||||||| ||  | |||||||||||| | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| ||||| | ||| | || ||   |  |  |||     | |   ||  ||||      || |   | || |||  |   ||||| |  || |  |  |||    ||                       
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggctttacttgtttcacaaaaccattcccttttgtggctgaag