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ATGATCTAGACCAGGCATATGATAGCATATCAGCATTTTCTTCCAGGAGAAATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGgttagaccttcatatcacatatgcgaatctgtactttctgtttcatgcctattataaggctcttgaaacaagtataactgtccagttttttagtgtggat...
species | Arabidopsis thaliana |
transcript | AT5G48520.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAG AGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTEST: gi|164076240|gb|ES213343.1|ES213343
genomic: AATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGgttagacctt ... taattgacagAGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCT
EST: AGGAGGCCG-TTTTGGAGCAGAAGAAAGCATTTAAAGAAGTAAG AGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTEST: gi|164209696|gb|ES013197.1|ES013197
genomic: AGGAGGCCGTTTTTGGAGCAGAAGAAAGCA-TTAAAGAAGTAAGgttagacctt ... taattgacagAGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCT
EST: AGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTTAAAGAAGTAAG AGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTEST: gi|164069837|gb|ES124469.1|ES124469
genomic: AGGAGGCCGTTTTTGGAGCAGAAGAAAGCA-TTAAAGAAGTAAGgttagacctt ... taattgacagAGATGCAACTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCT
EST: AATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAG AGATGCAACTTTGGCGCATAAGGCTGAAGCCTT
genomic: AATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGgttagacctt ... taattgacagAGATGCAACTTTGGCGCATAAGGCTGAAGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCTAGACCAGGCATATGATAGCATATCAGCATTTTCTTCCAGGAGAAATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGgttagaccttcatatcacatatgcgaatctgtactttctgtttcatgcctattataaggctcttgaaacaagtataactgtccagttttttagtgtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaag