1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTAAAGAAGATGAACTCTTAAAGCTGATCCCCATGGTTTCACGTCGCCGTCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTGgtttgttctcttaacttttagtatatggctgattatcttacaggttatgacatttcgataggaaagttgatgtttgatagtaactatttagtgagtgata...
species | Arabidopsis thaliana |
transcript | AT5G48385.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTG GTGTGATTGAAGTTCTCGTGAACAGTGGAAAACAGATTGATGCGGTTAACTEST: gi|47830768|gb|CK120452.1|CK120452
genomic: TCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTGgtttgttctc ... tttattccagGTGTGATTGAAGTTCTCGTGAACAGTGGAAAACAGATTGATGCGGTTAACT
EST: TCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTG GTGTGATTGAAGTTCTCGTGAACAGTNGGAAA-CAGATTGATGCGGTTAAC
genomic: TCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTGgtttgttctc ... tttattccagGTGTGATTGAAGTTCTCGTGAACAGT-GGAAAACAGATTGATGCGGTTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAAAGAAGATGAACTCTTAAAGCTGATCCCCATGGTTTCACGTCGCCGTCAGGCAGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTGgtttgttctcttaacttttagtatatggctgattatcttacaggttatgacatttcgataggaaagttgatgtttgatagtaactatttagtgagtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataggaaa