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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaaacagttcatgtttctgtgcaaaatctttagctttatgtataattgacgagcccttgttgttgtttttaatgatttag

Basic information

species Arabidopsis thaliana
transcript AT5G48230.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435447|gb|EG478039.1|EG478039
EST:     ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
EST: gi|116435458|gb|EG478050.1|EG478050
EST:     ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
EST: gi|116466365|gb|EG508957.1|EG508957
EST:     ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
EST: gi|116435448|gb|EG478040.1|EG478040
EST:     ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
EST: gi|164009146|gb|ES078016.1|ES078016
EST:     ATCCCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGT
EST: gi|116435459|gb|EG478051.1|EG478051
EST:     ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG                         CTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT
genomic: ATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaa ... aatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT