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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCTGGTGGTGGAGGTGGTGCGCCTGTTGCAGCTGCTGCTCCTGCTGCTGGCGGTGGTGCTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGgtaaattatataacaatgaattcgtagcttttccctaacgaagcatgatctggtatatttatctaattgttttgtaaatttactgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G47700.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125283562|gb|EL297647.1|EL297647
EST:     CTCCTGCTGCCGAGGAGAAGAAGAAG                         GACGAACCAGCAGAAGAGAGTGATGGAGATTTGGGTTTTGG
genomic: CTCCTGCTGCCGAGGAGAAGAAGAAGgtaaattata ... actgttgcagGACGAACCAGCAGAAGAGAGTGATGGAGATTTGGGTTTTGG
EST: gi|124727354|gb|EH818756.1|EH818756
EST:     TGGCGGTGGTGCTGCCGCTGCTGCTCCTTGCTGCCGAGGAGAAGAAGAAG                         GACGAACCAGCAGAAGAGAGTGATG
genomic: TGGCGGTGGTGCTGCCGCTGCTGCTCC-TGCTGCCGAGGAGAAGAAGAAGgtaaattata ... actgttgcagGACGAACCAGCAGAAGAGAGTGATG
EST: gi|125141930|gb|EL179431.1|EL179431
EST:     CTGCCGAGGAGAAGAAGAAG                         GACGAACCAGCAGAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGAT
genomic: CTGCCGAGGAGAAGAAGAAGgtaaattata ... actgttgcagGACGAACCAGCAGAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGAT
EST: gi|164166661|gb|ES017437.1|ES017437
EST:     TGGCGGTGGTGCTTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAG                         GACGAACCAGCAGAAGAGAGTGATGGAGATTT
genomic: TGGCGGTGGTGC-TGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGgtaaattata ... actgttgcagGACGAACCAGCAGAAGAGAGTGATGGAGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGCTGGTGGTGGAGGTGGTGCGCCTGTTGCAGCTGCTGCTCCTGCTGCTGGCGGTGGTGCTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGgtaaattatataacaatgaattcgtagcttttccctaacgaagcatgatctggtatatttatctaattgttttgtaaatttactgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG