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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgactgattgattatatgtggtttcatgtatgttaagctcgaattcgaattagaagtgtgattatcataagcaaaaagcatcactttgtgaattgtttgtgtggttttgataatcatgttccttatttttcttgtctgactccgtatatag

Basic information

species Arabidopsis thaliana
transcript AT5G46860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46860.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0012g01850.t01 (Vitis vinifera), 5'ss of exon 3
TTCAAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgactgattgattatatgtggtttcatgtatgttaagctcgaattcgaattagaagtgtgattatcataagcaaaaagcatcactttgtgaattgtttgtgtggttttgataatcatgttccttatttttcttgtctgactccgtatatag
||||||| |||||||||||||||||||| |||||||     || || ||||| |||||  | ||||||||||| || || || || | |||||| || ||||||      | | |  |||| ||| ||    |   | ||  || | |   |  |||||     ||   ||  ||| ||  ||   |    |  |  |   | ||  || ||                                             
TTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGgtaattattgtaagtc-ttatttgtagt----tagtttttgtgcacaa---catattagc----tgtcaattttaatcaccaaatgttgagtcttacaaaatctgcctgatt---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038439|gb|DR334194.1|DR334194
EST:     AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAG                         CTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
genomic: AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
EST: gi|124883511|gb|EH962413.1|EH962413
EST:     AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAG                         CTATACGGCGGGTG
genomic: AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTG
EST: gi|86038429|gb|DR334184.1|DR334184
EST:     AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAG                         CTATACGNCGGNTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
genomic: AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
EST: gi|124786997|gb|EH876676.1|EH876676
EST:     GCTCTTCCCTCTAG                         CTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
genomic: GCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
EST: gi|86038438|gb|DR334193.1|DR334193
EST:     AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAG                         CTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
genomic: AGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
EST: gi|124739264|gb|EH830426.1|EH830426
EST:     CTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAG                         CTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA
genomic: CTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGgtaacgtgac ... ccgtatatagCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCA