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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCTCTTGTTTCGCGAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttttcgtttttataaagaattatagcttagcttctcggttcttggttttgattagattagtatttgttgtatatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G46750.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124935278|gb|EL012277.1|EL012277
EST:     GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCT
genomic: GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCT
EST: gi|164198239|gb|ES208358.1|ES208358
EST:     GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTACCTG
genomic: GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTACCTG
EST: gi|125081369|gb|EL142618.1|EL142618
EST:     GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATT
genomic: GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATT
EST: gi|164223488|gb|ES088300.1|ES088300
EST:     GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCTCTA
genomic: GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCTCTA
EST: gi|116474060|gb|EG516652.1|EG516652
EST:     AAAGTCTGGGAAGACTGGTGGTCTTGGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCTCTATGAGTAGAAGCCTGAAGAACCTGTACCTGTGATT
genomic: AAAGTCTGGGAAGACTGGTGGTCTTGG-TGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATT
EST: gi|125023865|gb|EL096134.1|EL096134
EST:     GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAG                         TCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTA
genomic: GAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttt ... gtatatgtagTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACCTGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCTCTTGTTTCGCGAAAGTCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGgtaacgtttttcgtttttataaagaattatagcttagcttctcggttcttggttttgattagattagtatttgttgtatatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG