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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtcttatctttctctcgttataagcttggtttaaagtcttctttagatgatttactctcttctttctgtgtttgtttgcattgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G46570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 3
AGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtct-tatctttctct----cgttataagcttggtttaaagtcttctttagatgatttactctcttctttctgtgtttgtttgcattgtttgcag
||||| || | | | || ||||| ||||||||||||||||| ||| | ||||| || ||||| ||||| ||||||||| | || || |||||||| ||||||| |  ||| |||| ||   |    | || | |||     ||||||   |  |    |  ||  ||||||| |   | |  |||||  | ||| |  |  
AGAATGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTTGCTGAGTACATGCCAAATGATACTTTGTCCAAACATCTCTTTCACTgtacttctctatatcctttcattcaactttgttagcagtcattaaagctctagtactttttttccctctcttgtcattctccttgttgac-ttgctgtctt

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 3
AGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtct-tatc-tttctctcg---ttataagct-tggtttaaagtcttctttagatgatttactctctt-ctttctgtgtttgtttgcattgtttgcag
||| | || | | | || ||||| ||||||||||||||||| ||| | ||||| || ||||| ||||| ||||||||| | || || |||||||| ||||||| |  ||| |||| ||||  ||    || | |||  |  || ||  ||||  |||| |    |||| | || |  ||| |  |  ||  | |||||     
AGACTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAACATCTCTTTCACTgtacttctctatatcctttcattcaattttgttagcagtcattaaagctctttattagctctagtactttttttccctctcttgtcattctccttgttga---

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 3
AGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtcttatctttctctcgtta-taagcttggtttaaagtcttctttagatgatt---tactctcttctttctgtgtttgtttgcattgtttgcag-
||| | || | | |||| |||||||||||||||||||||||  || | ||||| ||||| || ||||||||||||||||| || |||||||| |||||||||| |  || | ||| |||||| | | |   ||| |||||     |  |  |   | ||   |  | | |  || | ||   |  |  |||||||   |  
AGATTGGTGAATCTGATTGGTTGCTGTGCTGAAGGAGATGAACGGCTTTTGGTAGCAGAATACATGCCCAATGATACTCTTTCCAAGCATCTATTCCACTgtattgctcat-tctctctctcttcagtttcctttgtttattaattgataaaatgggttagatggtatataattccagtccataatctcattgttaaaata

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 3
AGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtcttatctttctctcgttataagcttggtttaaagtcttctttagatgatttactctcttctttctgtgtttgtttgcattgtttgcag-------
||| | || | | | || || | |||   ||| || |||||| |  |  | || || ||||||||||| ||||| |||||| |||||||| | |||||||||||  ||   ||||||      |   | |  || |   |||    | ||   ||  || |  |  |  |||| | | |||  | | |||||   |       
AGATTGGTGAATCTAATTGGGTACTGCTGTGAGGGTGATGAGCGTCTTCTTGTCGCGGAGTATATGCCAAATGACACTCTCGCAAAGCATTTGTTCCACTgtaa--gtgacatctttgctgtatgggaggtctgataacaagataaccttttctgtctttcaatgatgattctat-tctgtaagaagtgttttgcgctaacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059597|gb|DR355354.1|DR355354
EST:     GGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACT                         GGGAAAAGCAGCCACTTCCATGGGNNATGCGTGTTCGAATCGCAGACTATA
genomic: GGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTgtaatagtct ... ttgtttgcagGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCAGACTATA