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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGAGGAACTTCAGTGACACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttctgtttcttttgcgatgaaagtttccttgaattagttacattaatggctttgtataatggttttggtacttggattcttcatgtatctgta...

Basic information

species Arabidopsis thaliana
transcript AT5G45775.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125159872|gb|EL187747.1|EL187747
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTG
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTG
EST: gi|164004643|gb|EL970615.1|EL970615
EST:     ATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|124857617|gb|EH942054.1|EH942054
EST:     AGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: AGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|125102344|gb|EL157133.1|EL157133
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCA
EST: gi|86063997|gb|DR359754.1|DR359754
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACAGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|86077797|gb|DR373554.1|DR373554
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|124812295|gb|EH897161.1|EH897161
EST:     TGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: TGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|125317910|gb|EL331995.1|EL331995
EST:     TGCTTTGGATTTGGTATCCAAGAGCACTATTGATCTTGGAATCAAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
genomic: TGCTTTGGATTTGGTATCCAAGAGCAC-ATTGATCTTGGAATC-AAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
EST: gi|125313960|gb|EL328045.1|EL328045
EST:     CACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGTCTTTTACGTTGTCCTTGA
genomic: CACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|47828470|gb|CK118154.1|CK118154
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|164146806|gb|ES184848.1|ES184848
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCAC
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCAC
EST: gi|47828450|gb|CK118134.1|CK118134
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|86063987|gb|DR359744.1|DR359744
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|164080779|gb|ES208498.1|ES208498
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|124974425|gb|EL047984.1|EL047984
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         A
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatag-
EST: gi|124974425|gb|EL047984.1|EL047984
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         A
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatag-
EST: gi|86084150|gb|DR379909.1|DR379909
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|164119905|gb|ES145335.1|ES145335
EST:     TATCCAAGAGCACATTGATCTTGGTAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
genomic: TATCCAAGAGCACATTGATCTTGG-AATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
EST: gi|125112494|gb|EL163562.1|EL163562
EST:     CTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: CTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|163980364|gb|EL973973.1|EL973973
EST:     GTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGAC
genomic: GTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGAC
EST: gi|86063981|gb|DR359738.1|DR359738
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|164175092|gb|ES188431.1|ES188431
EST:     GTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: GTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|116451722|gb|EG494314.1|EG494314
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|124989201|gb|EL061534.1|EL061534
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GTACGATCCTTCCA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCA
EST: gi|86064031|gb|DR359788.1|DR359788
EST:     ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA                         GT-CGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTG-CCTTGA
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: gi|125009955|gb|EL082224.1|EL082224
EST:     GCACATTGATCTTGGAATCAA                         GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: GCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGAGGAACTTCAGTGACACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttctgtttcttttgcgatgaaagtttccttgaattagttacattaatggctttgtataatggttttggtacttggattcttcatgtatctgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa