1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TACGAACAACTGGAAGATTAAAGTGATAGACATATTTCAGAAGTTCTTTACAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttgatttctctcatctttttctctattctttggcttccgagccgggtttatagtttgtgcttaattctcaatgccttatgcaattgtag
species | Arabidopsis thaliana |
transcript | AT5G45430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGGCGATGGAGAG GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGEST: gi|86059416|gb|DR355173.1|DR355173
genomic: AGAGGCGATGGAGAGgtaggtttga ... gcaattgtagGTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCG
EST: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGTAGAG GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGEST: gi|86070348|gb|DR366105.1|DR366105
genomic: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttga ... gcaattgtagGTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCG
EST: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAG GT-TACATTACTCAAAGAAAGT-GGTGACGGAACATTTGGGAATGGTTGGEST: gi|116444408|gb|EG487000.1|EG487000
genomic: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttga ... gcaattgtagGTATACATTACTCAAAGAA-GTTGGTGACGGAACATTTGGGAATGTTTGG
EST: CAGAGAAATACTTAATGGGATACTTTGCTTCACCTAGAGGCGATGGAGAG GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGEST: gi|116444419|gb|EG487011.1|EG487011
genomic: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttga ... gcaattgtagGTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCG
EST: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCAATGGAGAG GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCG
genomic: CAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttga ... gcaattgtagGTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGAACAACTGGAAGATTAAAGTGATAGACATATTTCAGAAGTTCTTTACAGAGAAATACTTAAGGGGATACTTTGCTTCACCTAGAGGCGATGGAGAGgtaggtttgatttctctcatctttttctctattctttggcttccgagccgggtttatagtttgtgcttaattctcaatgccttatgcaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA