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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaatgtgaaaatttgtaatataaagtttcaatcttttgatggtcttcttctttgtatacag

Basic information

species Arabidopsis thaliana
transcript AT5G45370.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G09520.1 (Glycine max), 5'ss of exon 3
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctc--aacatt-----actgtaaaatgtgaaaatttgtaatataaagtttcaatcttttgatg-gtcttcttctttgta-tacag------------------------------------------------------------------------------
|  | |||||||| ||||||   || || |||||||||||||| ||||| ||||| ||||| || || |||||||| ||||| ||||||||  ||||||||| ||| | | ||  ||   | ||||     | |  ||  |||       || |   || |  |  ||       | |  |   ||   ||| | | |||                                                                              
TTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCGGCTGCCATACAGCCATCCATTCCAGTCTTTACCTTTCTGTTGGCTGTAATGATGGGgtcagtttcatttcacttgtatcatttatcaatttcaagttgtatgtgcgtgcatcctagaactcaaaaacacaaaggcatgcactcacttgcagtgcagaaatgtgtatattaataaacttattcagatacactgggacatacagtaatctgtatctgtataaaccttttcatgcag

upper sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G09540.1 (Glycine max), 5'ss of exon 3
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaaca--ttactgtaaaatgtgaaaatttgta-----atataaagtttcaatcttttgatggt---cttcttctttgtatacag-
|  | |||||||| ||||||  ||| || ||||||||||||||||||||| |||| ||| | || || |||||||||||||| ||  ||||  | ||||||| ||| | | | |  || |    ||  ||   | | | ||  | | ||     ||||||| |||  || | || ||  |    |  |  ||| | || |  
TTTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTGTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGGgtcagtttcactcttatccatttcttcttgagtattttaaatgtctatactattatataaaattt--atttattaatcattaattcatcttttttctagaac

upper sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G08380.1 (Glycine max), 5'ss of exon 3
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaat-gtgaaaatttgtaatataaagtttcaatcttttgatggtcttcttctttgt-atacag---------------------------------------------------------------------------
|  | ||||| || || |||   || || |||||||||||||||||||| || || ||| | |  || |||||||| ||||| ||||||||  ||||||||| ||| |   |    |||   || ||  | | |  ||    ||  |||| ||   |||   |          ||      |||||   ||||                                                                           
TTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctctctcgtttcag--tttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcag

upper sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 4
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaatgtgaaaatttgtaatataaagtttcaatct----tttgatggtcttcttctttgtatacag---------------------------------------------------------------------------
|  | |||||||| || |||   || || |||||||||||||||||||| || || ||| | |  || |||||||| ||||| ||||||||  ||||||||| ||| |   |    | |   || ||  | | | |     ||||| |  | |  |||   |||            ||  ||   ||||  ||||                                                                           
TTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtttctctcattttag--tttctacatattattgtgttttgttaatttatctttttttctggaacacacaactccactctattgtgcacagaagtttgtacattaattaaattaatatacatcaggacatagagtaatgtgcaccttgataaacttattcatgcag

upper sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0087g00880.t01 (Vitis vinifera), 5'ss of exon 3
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaatgtgaaaatttgtaatataaagtttcaatcttttg-atggtcttcttctttgtatacag
| || |||||||| ||  |    ||||| |||||||||||||| ||||| | ||||||  |||| || |||||||||||| | ||||||    | ||||||| ||| |||      ||   |   |||  |  |  |  |  |||   | |     |||||| |     ||   |||  |   || |     
TTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATATTGGCTACAATAATGGGgtaagtttgatccatttctg-acccctg--atttaggtgatcttgctgt-tgcttgttcaatatcacatataagctttgttaatgcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164077828|gb|ES064730.1|ES064730
EST:     ATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGG                         TACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAG
genomic: ATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatga ... ttgtatacagTACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAG
EST: gi|86073275|gb|DR369032.1|DR369032
EST:     ATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGG                         TACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAGTTGGAGG
genomic: ATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatga ... ttgtatacagTACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAGTTGGAGG
EST: gi|19879168|gb|AU239999.1|AU239999
EST:     TACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCCTGTCTTGATGGG                         TACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAA-CGAAAGTTGGAGG
genomic: TACAACCATCAATCCCTGTCTTTACATTTCTCTTGGC-TGTCTTGATGGGgtgagtatga ... ttgtatacagTACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAGTTGGAGG