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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCGACAGAGAAGAGAGATCTTTATGATGCCGATCACGGGAAGAAAGTGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatcaatcattgctacttcctcttaatcgaaaacttctttaagggtttaagtctcattgtttcggtttgtatgaatag

Basic information

species Arabidopsis thaliana
transcript AT5G43780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G28980.2 (Glycine max), 5'ss of exon 3
CCATCCGACAGAGAAGAGAGATCTTTATGATGCCGATCACGGGAAGAAAGTGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatcaatcattgctacttcctcttaatcgaaaacttctttaag--ggtttaagtctcattgtttcggtttgtatgaatag-----------------
||||||    ||||| |||||||| |||||||| || || |||||||||||  | ||||||||||| ||||| || || || |||||||| || |||| |||    ||  |  |||  | | | ||| | |    |||||   | |||     ||| | | | |||      | ||| |  ||                   
CCATCCAGTTGAGAAAAGAGATCTGTATGATGCTGACCATGGGAAGAAAGTATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgt---aattgagaatt--tgccttctcattagtataaactgagtgaagttcacttaggccactttga---aatatgtgttgatcattttcattcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454015|gb|EG496607.1|EG496607
EST:     TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAG                         GTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
genomic: TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatca ... gtatgaatagGTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
EST: gi|116377755|gb|EG420347.1|EG420347
EST:     TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAG                         GTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
genomic: TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatca ... gtatgaatagGTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
EST: gi|116454026|gb|EG496618.1|EG496618
EST:     TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAG                         GTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
genomic: TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatca ... gtatgaatagGTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCC
EST: gi|124721409|gb|EH812811.1|EH812811
EST:     TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAG                         GTCGCTGCATATGACAAAACTCAGGGG
genomic: TGCTTAGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGgttaagatca ... gtatgaatagGTCGCTGCATATGACAAAACTCAGGGG