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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatgattggttttggcttctctagcaagatcaagttataattgttattttctcaaatactccttttagaacttttgtatgatgtagcctggcagtgaagttgatgaaatgatacatgtctttttaactgcag

Basic information

species Arabidopsis thaliana
transcript AT5G43710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 2
ATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatgattggttttggcttctctagcaagatcaagttataattgttattttc--tcaaatactccttttagaacttttgtatgatgtagcctggcagtgaagttgatgaaatgatacatgtctttttaactgcag
|||||||| || || || || |||||||||||||||||  | || ||| || |||| |||||||||||||||||||||||||  ||| ||||||||||||    || || || |    || | | |  |   ||| | |||  || || |  ||| | | | |  |    |  ||||      || || | ||||                                      
ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagta----ttagtattcg----tccaaccattttttgttttcattaataattccattcatacatttccgtatttatatttgctctgggttgctttgcag--------------------------------------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 3
ATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatgattggttttggcttctctagcaagatcaagttataattgttattttctcaaatactccttttagaacttttgtatgatgtagcctggcagtgaagttgatgaaatgatacatgtctttttaactgcag
|||||||| || || ||| |||||||| | |||||||||||||| ||  || | || |||||||||||||||||||| |||| |||| |||| |||||||||| |   || | || |   |   | || | | || |  |||   | |  |    | | | |  || |      |  | |  | | |    | |                                     
ATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATTgtgagtaatgctcttttcttgcattaatgatatgaccta-ttgtttttggggtgtctt--gttgcccataatacattgacagcttcacttggtcaaatattag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125210275|gb|EL225229.1|EL225229
EST:     GCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATA                         AATAAAACAGTCTCTGTGTTTGAGACAA
genomic: GCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatg ... ttaactgcagAATAAAACAGTCTCTGTGTTTGAGACAA