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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAAAGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATTgtaagtctttttgtttggtgatttggttttgaagcttgtggaattcaaatctgatcaattggtgttttttccttctgtgttgcttag

Basic information

species Arabidopsis thaliana
transcript AT5G42420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42420.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAAAGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATTgtaagtcttt-----ttgtttggtgatttggttttgaagcttgtggaat----tcaaatctgatcaattggt--gttttttccttctgtgttgcttag--
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TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaatttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465657|gb|EG508249.1|EG508249
EST:     GTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATT                         TTAATAGGTTCTCTACAGAAGAAATATTCAATTGGGTCCTTTGAGTTGTTG
genomic: GTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATTgtaagtcttt ... tgttgcttagTTAATAGGTTCTCTACAGAAGAAATATTCAATTGGGTCCTTTGAGTTGTTG