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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGGCAAATCTACTTGGGTGTTGTTATGAAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATCTTTTCCACTgtaagttcctaacatactcggtcagtattttctcctatttggttatgctgctaacaagtactacttgatagtttgaatgggtgcttaacaaaaaatgattatttatgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G41260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 4
AGGATGGCAAATCTACTTGGGTGTTGTTATGAAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATCTTTTCCACTgtaagttcctaacatactcggtcagtattttctcctatttggttatgctgctaacaagtactacttgatagtttgaatgggtgcttaac-aaaaaatgattatttatgtgtttag
||  ||  |||||| ||||| ||||||| ||||| |||||| ||  ||||| ||||||| | |||||| ||||| ||||||||||| ||| | ||||| ||||||| | ||||  ||         | |||  |    || | | |||   | ||  ||     ||  ||  |  ||    |   |||| |   | |||                
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTgtaagtgcataactgacaattaattcagtttgccagcattagctttgccatttacttgtttgtatttttaaatcaaactcttatctaaccagtgactgag---------------