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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagtttctgacatcagtctatataattcatctcattctccttgggaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G41060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttc-gttttcctgtccgttagtttct---------gacatcagtctatataattcatctcattctccttgggaattt-gcag--------------------------------------------------
||| ||  | || ||||| |||||||| |||||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||| ||||| || |  |  |||||| ||  | |||| | |   | |||| | |    ||           |||||  |  ||| |  ||    | ||||| |  | |  |||    |                                                  
GCTTTACCGGCCACCTCGATGCTCACACTGTTCGATATGCAACAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAATGCATAGGACTTgtaagtatcatgtttttccagcagttctgtacctatccttaccgtaggaaagacatgtgcgtatttgtttggagttattcttccagtgcttttcattgagctctcttcaaatcaacttgagcctaatcataaagcatatttggtgcag

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagtttctgacatcagtctatataattcatctcattctccttgggaatttgcag---------------
||| ||  | || ||||| ||||| ||||| || || ||||||||||| || ||| | |||||||||||||| || |||||||| ||||| || |  |  |||||||  |   | |     | |  |     ||   | || |||| |  || |||           ||  || |   | |                     
GCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTgtaagttcatacatatgcaaatctgataaa-attccctacttacataaa-ctgtatgtactgatgtgttagccgtttcagtccatgaggagtttatctgctt

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttc---gttttcc-----tgtccgttagtttctgacatcagtctatataatt--catctc-------attctccttgggaatttgcag-------------------------------------------
| | ||  |||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||||||| ||||||||||| ||||| || || || || |  |  ||||||| | |    || |   || || |      ||||     || ||   ||   | | || |  |   || ||       ||| |  |||    ||  |                                             
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G821611_T01 (Zea mays), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcg-gtttttcgttttcctgtc--cgttagtttctgacatcagtctatataattcatctcattctccttgggaatttgcag---------------------------------------------------------------------------------------
||| ||  |||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||||||| ||||||||||| ||||| || || || || |  |  ||||||| |||| | |  | | | |  |     |||   | | | | | || ||    |  | ||  |     |   | |   |||| ||                                                                                       
GCTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttactcgagatgctagctgttttaatagcgtccttatattagaacaatcgcggtg-tgcacatacacttgaattgatgtttggaggtactctttctgggtagattttcatttttttaagttgttgactaactttctattctgttaagcctgatcatcaacatatttgtgcag

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G433942_T01 (Zea mays), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagtttctgacatcagtc-tatataattcatctc----attctccttgggaatttgcag--------
| | || || || ||||| ||||| ||||| || || ||||||||||| |||||| | |||||||||||||| || |||||||| ||||| || |  |  |||||||| |    ||  |  ||     || |  ||  | |        || |||| |||   |  |    | | |   |   |  || |||        
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTAGAACGTTTTGACCATCACTGCCCCTGGGTTGGACAATGCATAGGACTTgtaagtttatgaagttaacacttgtgactcggaaagcatgtctttctgttcatatacaatcttttgccaacactttatgttaaatatttcagcccctgtt

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagttt---ctgacatcagtctata-taattcatct-cattctccttgggaatttgcag--------
| | || || || ||||| ||||| ||||| || || ||||||||||| || ||  | |||||||||||||| || |||||||| ||||| || |  |  |||||||| |    |   |  ||     || |  ||  |    ||   |   | || | || |||  |  || | |   |   |  |  |||        
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagtttctgacatcagtctatataattcatctcattctccttgggaatttgcag-------------
|||||| || || ||||| ||||| || || || || || || |||||||| ||| |||||||||||||||||||||||||||| || |||||||  |  ||| |||      ||| ||  ||   |||   ||  ||  |    ||  | | | | |   || |  |       | | |  |  |              
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtatgttggatcttttgtctcttgagtgttattttattctttttttctttttgtgtgaagaatgttttgggggaagagtagcttaaccccattgttaagt

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 2
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagtttctgacatcagtctatataattcatctcattctccttgggaatttgcag--------------------
||||||  | || ||||| ||||| || || || || || || |||||||| ||| ||||||||||||||| |||||||||||| || |||||||  | |||| |||    | | ||| || | |  ||  |||| ||| |    |     | | |   | |    | | |  | ||| |   | ||                    
GCTCTACCGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTATCCTTGGGTTGGGCAGTGTATTGGGCTAgtatgttg---gatcttttgtctcctagt--gttattttattcttttttcttttttgtgtgaag--aatgttttgggggaagagtagcttaatcccattgttaagtg

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G27160.1 (Glycine max), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtt---tctcggtttttc-----gttttcctgtccgttagt-ttctgacatcagtctatataatt--catctcattctccttgggaatttgcag---
|||||| || || ||||| ||||| || || || || || || |||||||| ||| ||||||| |||||||||||||||||||| || |||||||  |  |||||||   |||    | | |     ||| |  | | | ||  | || |    | | | |     |     |||| | || | ||  |  |   |||   
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGATCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtaagttggatcttatatctcccaagtgttattttattcttttttctttttgtgtgaatttgggggaagagtatcttaatcccattaagtgtg-acagaga

upper sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagt--ttctcggtttttcgttttcctgtccgttagtt-tctgacatcagtctatataattcat-ctcattctccttggga--atttgcag-------
||| |||||||| |||||||||||||| ||||| || || || ||||| || ||| | ||||| || ||||| ||||||||||| || |||||||  |  |||||   |      ||||     ||        || | | | |  | |   || | | || | |   | |     ||    |  |||    |       
GCTTTATAGACCTCCTCGCTGCTCACACTGTTCCATATGTAATAACTGCGTCGAACGATTTGATCACCACTGCCCTTGGGTTGGGCAGTGTATTGGACTGgtaagagataaattattttagaccttatgacatattggatgtatagcctatatccaaagaagtaacatttacaaaactcaacaccattcatggggtgggt