1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAAACTCAGTGATCGGCTTCCTGAACCATACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGAGCGTATCCACCGGATCTAAGTCTTGTAACTAAGgtttggtgctctttctctccatttgtatacaattagaaaattcatctactatgatctaagcaatttggctattttcttccag
species | Arabidopsis thaliana |
transcript | AT5G40810.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCAATGGAGGAGCGTATCCACCGGATCTAAGTCTTGTAACTAAG GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTEST: gi|86078839|gb|DR374596.1|DR374596
genomic: GCCAATGGAGGAGCGTATCCACCGGATCTAAGTCTTGTAACTAAGgtttggtgct ... tttcttccagGCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGT
EST: GCGTATCCACCGGATCTAAGTCTTGTAACTAAG GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGT
genomic: GCGTATCCACCGGATCTAAGTCTTGTAACTAAGgtttggtgct ... tttcttccagGCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAACTCAGTGATCGGCTTCCTGAACCATACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGAGCGTATCCACCGGATCTAAGTCTTGTAACTAAGgtttggtgctctttctctccatttgtatacaattagaaaattcatctactatgatctaagcaatttggctattttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG