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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAATGAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAAGAGAAGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCGgtatatactgatgcattattgttaaaatgatccatctttctgtgacaattcatactgttttggggtctattagcgattcataacttatgtgcttttgaatccag

Basic information

species Arabidopsis thaliana
transcript AT5G40710.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057312|gb|DR353069.1|DR353069
EST:     AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCG                         AGTCATGGTAAATGTCTGGCGGATCTTTGTGGAGCGTTGCATTG
genomic: AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCGgtatatactg ... ttgaatccagAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTG
EST: gi|125145435|gb|EL180632.1|EL180632
EST:     AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATGTACTTAATGCG                         AGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCG
genomic: AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCGgtatatactg ... ttgaatccagAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCG
EST: gi|19878927|gb|AU239758.1|AU239758
EST:     AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCG                         AGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGNGATCTT
genomic: AGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCGgtatatactg ... ttgaatccagAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGTGATCTT