1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatacattaactcgagaacaagaacttatgttgttgattcttttagttgaattgtaaaattgattctgttttgttattag
species | Arabidopsis thaliana |
transcript | AT5G40530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATG TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTTEST: gi|86085419|gb|DR381178.1|DR381178
genomic: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
EST: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATG TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTTEST: gi|116455372|gb|EG497964.1|EG497964
genomic: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
EST: AATGTTTGATATG TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
genomic: AATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatacattaactcgagaacaagaacttatgttgttgattcttttagttgaattgtaaaattgattctgttttgttattag
- - AAAGAA
- - AAGAAG
- - - AGAAGC
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - AAGAAG