1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatctgttgttactgtcaagctagacttcgctttttggtctgttatatagagtttatatgggattaggtgttgtgacctgaaagttgttgttcttataatctgtag
species | Arabidopsis thaliana |
transcript | AT5G39740.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAEST: gi|125284226|gb|EL298311.1|EL298311
genomic: CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
EST: TTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAEST: gi|164094574|gb|ES095139.1|ES095139
genomic: TTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
EST: GAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAEST: gi|116398433|gb|EG441025.1|EG441025
genomic: GAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
EST: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAEST: gi|124917466|gb|EH991340.1|EH991340
genomic: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
EST: AGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAEST: gi|124977875|gb|EL051149.1|EL051149
genomic: AGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
EST: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATEST: gi|116398349|gb|EG440941.1|EG440941
genomic: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTAT
EST: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAG ATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
genomic: ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatct ... taatctgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGgtattgatctgttgttactgtcaagctagacttcgctttttggtctgttatatagagtttatatgggattaggtgttgtgacctgaaagttgttgttcttataatctgtag
- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA