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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGGGAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAgtaagcataaatattagaattttgctttggtatcttgaaaaatgtaatgttttgattataagtgacattgtttcttttatacttttcaaaacattatag

Basic information

species Arabidopsis thaliana
transcript AT5G38530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G38530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0083g00460.t01 (Vitis vinifera), 5'ss of exon 3
TGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGGGAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAgtaagcataaatattagaattttgctttggtatcttgaaaaatgtaatgttttgattataagtgacattgtttcttttatacttttcaaaacattatag--
|||  |||||||||||||||  |||   || |||||||||||||| ||||||||||||||  | ||||||||||  ||  ||||||| || ||||| |||||||| | | | || | |  | |   |    |  |||    |  || || ||    | ||   ||  |  ||    ||  |      || ||| || |   
TGCACAAGAAGGCGTCAAGAGTGTTACTACTGAAACCGGTGCTGGCCAATGGGGAAGTTCACTGGCCTTTGCTTGCAGCTTATTTGGCCTTGACTGTGAAgtaagga-atacatcatatatctttctattcaatttggttgacttattgcttactatgtattagatgtatttaagattgaagcccataacacaataaaagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116461703|gb|EG504295.1|EG504295
EST:     GGGGAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAA                         GTATGGCAAGTAGCCAACTCTTACCATACAAAGCCATATCGCCGGTTAATG
genomic: GGGGAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAgtaagcataa ... aacattatagGTATGGCAAGTAGCCAACTCTTACCATACAAAGCCATATCGCCGGTTAATG