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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtagagcctaatgttcctgaaattactgttgtcgtatcttcgttattggtgtatctgaatctactgatttggcattactaaaacttttttccag

Basic information

species Arabidopsis thaliana
transcript AT5G37850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 3
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtagagcctaatgttcctgaaattactgttgtcgtatcttcgttattgg-tgtatctgaatctactgatttggcattactaaaacttttttccag
||||| ||||| ||||||||||| |||||||| || ||| |  |||| | |||||||||||| || ||||| ||||| || || |||||||||||||    | ||   |  |        |   ||  |  |       |   ||| |  | ||   | |||   |||   |  || | |                              
GGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGgtagaggtgggctgcgcttc------gttcaacatcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccag---------------------------

upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtagagcctaatgttcctgaaattactgttgtcgtatcttcg-ttattggtgtatctgaatctactgatttggcattactaaaacttttttccag
|| |||||||| |||||||| || |||||||| || ||  |  | || | ||||||||||||||| ||||||||||| || || ||||||||||||||   |   ||   |   |  | |  ||  |       || | |||   | |  ||   |  ||   | ||| | | |    |                               
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtacacaatctcgtac-----aattcacttgggacacataaacaattccagttgtgtgttatctcag------------------------------

upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagt----aatgtagagcctaatgttcctg-aaattactgt-tgtcgtatcttcgt-tattggtgtatctgaatcta---ctgatttggcat---tactaaaacttttttccag----------------------------------
|| ||||||||||| ||||| |||||||| ||||| |||||  |||| ||||||||||||||||| || ||||| || || |||||||||||||| ||  |  |     | |     ||  ||   || | | | |||    ||  | |  |  ||  |   || | |   |||   | | | ||    || | ||| ||   |  | ||    || | |||                                  
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag

upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagta----atgtagagcctaatgttcctgaaatt--actgttgtcgtatcttcgt-tattggtgtatctgaatctac---tgatttggcat---tactaaaacttttttccag-----------------------------------
 | ||||||||||| ||||| |||||||| ||||| ||| |  |||| |||||||| |||||||| || || || || || |||||||||||||| ||  |  |     | |     ||  ||   || | |   |||    |  | |  ||  ||  |   || | |    ||   | | | |     || | |||  |   |  | ||    || | |||                                   
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcaggactctgtggcttgatttatggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg

upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtag-agcctaatgttcctgaaatt---actgttgtcgtatcttcgttattggtgtatctgaatctactgatttggcattactaaaacttttttccag-------------------------------
||||||||||| || ||||| ||||||||||| || ||  |  |||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||| ||  |      ||   | |  |  || || |     |||||      | | | ||   |  |    |     | ||| ||| |  |   ||  |    || ||  | ||      |                                
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060294|gb|DR356051.1|DR356051
EST:     GGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAG                         GGTATCCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATT
genomic: GGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttg ... ttttttccagGGTATCCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATT