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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAGGCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGgtaataatgaagttagtgtggcatttcttagcaatttttgtttgtttttcctctgattattttttgtatttagatgtggaag

Basic information

species Arabidopsis thaliana
transcript AT5G37710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os06g14490.2 (Oryza sativa), 5'ss of exon 4
TGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAGGCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGgtaataatgaagttagtgtggcatttcttagcaatttttgtttgtttttcctctgatta---ttttttgtatttagatgtggaag----------------
|||| ||||||||||  |  ||     | ||| | | |||||| ||||| || ||||||||||||||||| |||||||| || ||| ||||||||||||||||||       ||    | | |  | || |   ||| | | |||    ||     ||     ||| ||  |||    |||  |                 
TGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGgtaattggtgccttttaatagaagctatttgttgtttct-tatgtcacgccagcattttaacctttctgcctttgttcgtgctattctagaacaagtttca

upper sequence: AT5G37710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G174315_T01 (Zea mays), 5'ss of exon 4
TGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAGGCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGgtaata-atgaagttagtg----tggcatttcttagcaatttttgtttg-tttttcctctgattattttttgtatt-tagatgtggaag-----------
|||| |||||||||| ||  ||     | ||| | | |||||| ||||| || ||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||  || | || | ||    | |||| |        ||     ||| | ||| || |  |||| |  |  ||  || |     ||            
TGAGAGATACATTTAAACAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatcatgtcattgcaaatagcatcttcccctgcttgcgaattgctcttttctttttttatgtcataaataatataaacaaaaacctactcttct

upper sequence: AT5G37710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0006g01030.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAGGCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGgtaataatgaagttagtgtggcatttcttagcaatttttgtttgtt-----tttcctctgattattttttgtatttagatgtggaag-------------
|||||||||| ||||| || ||||||||||| || |||||||| ||||| || | ||| ||||| || || ||||| || || ||  | || |||||||||| |||   |  |        ||        | |||||||||| |       |  || |   ||    ||||    |  | |  ||              
TGAGGGATACCTTTATTCCAGAAGGTCGGAAGCTTAGAGATCCCAGAAGACTATTTGCACCTGGCCGCATGTATCACATTGTAGAAAGAAAGTTTTGCAGgtgatacctacatccaaaatccaaactacctccatttttgtttctaatggactatctatctctacggattgttacaatttttccaaagttccctccctta