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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGGTGCTAACAAAGGTGGATTGGTTGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagttgcctcagaactgtgaatatttcaaggttttgttagttgattttaagacgaaacacaacctgatatatatgaaatgtgttttcttctacatttttgtcag

Basic information

species Arabidopsis thaliana
transcript AT5G30510.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125124848|gb|EL170586.1|EL170586
EST:     CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTT
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTT
EST: gi|164091835|gb|ES176577.1|ES176577
EST:     TTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAA-TACCTCTTAAGTTTGTG
genomic: TTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: gi|125074130|gb|EL138202.1|EL138202
EST:     GGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
genomic: GGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: gi|125212793|gb|EL227747.1|EL227747
EST:     AAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTAGAAAAAAGAAATACCTCTTAAGTTTG
genomic: AAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTT-GAAAAA-GAAATACCTCTTAAGTTTG
EST: gi|124995016|gb|EL067285.1|EL067285
EST:     CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: gi|125033254|gb|EL105523.1|EL105523
EST:     CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCT
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCT
EST: gi|47832014|gb|CK121698.1|CK121698
EST:     CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: gi|124745335|gb|EH836295.1|EH836295
EST:     GTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG                         AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
genomic: GTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: gi|125160163|gb|EL187895.1|EL187895
EST:     TCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATACG                         AAAGCAGCAGCTGAAGAGCTT
genomic: TCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCAT-CGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTGGTGCTAACAAAGGTGGATTGGTTGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagttgcctcagaactgtgaatatttcaaggttttgttagttgattttaagacgaaacacaacctgatatatatgaaatgtgttttcttctacatttttgtcag

- - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT