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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G28080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcat-gcag-------------------------------------------------
| |||| || ||| |||||||||||| |||||||||||||||| | |||| | ||||||||||| || |||||||||||||| || || ||  | || ||||||| |  | |   |    | ||  | |  |||| |  |  | | | |  |     ||||| |||||  || |  |                                                 
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttc-tttagttgcaac-tacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag

upper sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcatgcag----------------------------------------------------
| |||| || ||| |||||||||||| |||||||||||||||| | |||| | ||||||||||| || |||||||||||||| || || ||  | |||||||||| |  ||  |       | |     | |||| || || | | |||  |     ||||| |||||   || ||                                                    
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacatt---atttctgttcatcattcacttttgtgcgttttagatctt--gtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag

upper sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctc-------tctatctcataagtga--agt-tctcttgataacttactcataatgtttttatatctttcatgcag----------------------------
                           | |||||||| ||||| |  ||| |||| ||||||||||| |||||||||||||||||||||||| | ||||||| || |     |       ||  | | |||  |||  | | ||  ||   | |||      | |  |||||| | |||| |                                
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttattatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag

upper sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcatgcag-----------------------------------------------------
| |||| |||||| ||||| || ||| |||||||||| ||||| |  ||  |||| ||||||||||| |||||||||||||||||||| ||| | ||||||| || |     |  | ||       ||    ||   | |||   || |  ||   |  ||||   |||  |||                                                       
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctct-atattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag

upper sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 3
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagc---------ttatctctctatctca-taagtgaa--gttctcttgataacttactcataatgtttttatatctttcatgcag-------------
||||||| | ||| |||||||||||  |||||||||| ||||| | |||| | |||||||| ||||||||||| |||||||||||||| ||  | || |||||||          || |||    || | | || |||    |||    |  | ||    | | |  | |||| |  ||||  |                 
AACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAgtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatag