1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacattgacttttgtttaatagtagtgctctctctgttactgttctcatggtgtgcttgtgtatgtgtgtgtgttag
species | Arabidopsis thaliana |
transcript | AT5G25100.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGAAGATTGATGATGAGTATCGAGTTAACAT GATCCTTGATAATCTTCCTCTAGTGEST: gi|164118738|gb|ES121510.1|ES121510
genomic: AGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacatt ... tgtgtgttagGATCCTTGATAATCTTCCTCTAGTG
EST: TCTGCCAAGGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACAT GATCCTTGATAATCTTCEST: gi|124768018|gb|EH858148.1|EH858148
genomic: TCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacatt ... tgtgtgttagGATCCTTGATAATCTTC
EST: CAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACAT GATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTGATCCGGGEST: gi|125304398|gb|EL318483.1|EL318483
genomic: CAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacatt ... tgtgtgttagGATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTGATCCGGG
EST: TCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACAT GATCCTTGATAATCTTCCTCTAGTGGTTCCGAT
genomic: TCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacatt ... tgtgtgttagGATCCTTGATAATCTTCCTCTAGTGGTTCCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATCGAGTTAACATgtaggacattgacttttgtttaatagtagtgctctctctgttactgttctcatggtgtgcttgtgtatgtgtgtgtgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA