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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G23670.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttg-atacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
||||| || |   | || ||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||  ||||||||  | |||| ||    ||| ||| | | ||  |||||           ||||  |||   | | | ||  || || |||  ||   |  ||   ||   | ||||  ||| |  | | |  |||                                                                                
GATTGCTTCGGTAGGCCCATAGCAAGTGCACCAGATGCTTGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcacttcttcttct-tattgttatca-----------ttctaggatagagcttg-agcttaagacaat--tgggctgaaaaaattacgtgcagttctgttatctgggc--att--------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| ||||| |  ||||| ||| | ||    |||||||| ||||| |||||||||||||||||||| | ||||| ||||||||| ||  |||     ||  ||| | | || | ||      | ||     ||| |    |||| |  |     |||| | | ||||  || ||   || |  | |        |||    |     || ||    | |  | | ||    ||    |  ||   | |  |                                   
GACTGTTTCGGGCGACCGATAGCCAGCAAGCCTGATGCGTGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCAgta----tgaatacatttcttctcctg-----aatcccgatttcata---tctgattagcatgcatgata-tcctga--tccaacaattaacgctgcacctctgaataactctg---aatttctgatcgatgcaaatgcatatgtctacatatatatgcag-----------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| |||||||  || || ||  | || ||||| |||||||||||||| ||||||||||| ||||| |||||||  |||||||| ||  |||  || | |||         | |   |||| |  | ||| |                 || ||| |||||||||||||   |      ||| ||  ||      ||| ||  || |||   |  ||    | ||                                                             
GACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCAgtatgtatttct-----cacatctgattcagca--cctagtt-----------------agcataagaaaatgctgaatattatcttaggatgcatgct------attctctgatccaatgcttcttcaatgcag-------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| || |||   ||||| ||| | ||    || || || ||||| |||||||||||||||||||| ||||||| ||||||||| ||  |||  || | | ||||  |  | |  ||| |    ||             || || |   |   ||      |  |  ||  ||      ||||     |||| | | | |                                                                                      
GACTGCTTTTGGCGACCAATAGCCAGCAAGCCGGACGCATGGTTCGATGTGGTTGAGCGCTACTCAAATGACAGCAACAAGACACTCCAgtacgtat-tatactcct-ctctcgtataaaatatcac-----------ttttgctacaaatctaaagttgttttttataagacaaagagatatgtctttgtcacactatata-----------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaatt--cgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| || ||||  || || ||  | |||||||| ||||||||||| |||||||||||||||||||| ||||||  ||||||||| ||  |||| ||     ||||  |   || |   |  ||||  |       | |  || |    | | || | || || || |  |   | ||  ||||| |||                                                                                                    
GACTGCTTTGGCCGGCCGATTGCTAGTGCACCAGATGCTTGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgt-----tactcttacattgcatcctatagtaatttagcaatcgtctcagc---gtggatgtcaacat-ctaacctggtgcatctttgatgcag----------------------------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctg--tgcag
||||| ||||   | || ||| | |||||||||||| | ||||||||||| |||||||||  ||| || ||||| ||||||||  |  ||| ||  | | | ||  | || |   ||   | |    |  |||       |   |  || |||| |  ||   |   |  | ||   |   |    ||| | ||  |||    |  | | | | | ||    | |||   |||  ||   ||  | |||        |||  | | |  || | | | |   |||||
GATTGCTTTGGTAGGCCGATAGCAAGTGCACCTGATTCATGGTTTGATGTTGTTGAGCGCACCTCAAACGACAATAACAAGACATTACAgtaagcatttattctattattcta--atttatggaaacaatttcagcttagccaatacgacaataggctaaacatagttaagcatatctttcattcacttttcaagatgtaaattgaatgatcattcagacataaatt---attgcaagaaaaacaagtt------cgaactgtcgctaatgctcattattgttgcag

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| |||||||   |||| ||  | ||||| |||||||||||||||||||| || || |||||||| ||||| ||||||||||| || ||||    |  |||  || | ||||   | |  || |  |   || ||  ||| | ||       |   |    | ||     | | | || ||    |  || || ||                                                                                         
GACTGTTTTGGGAGACCAATTGCAAGTGCTCCTGATGCTTGGTTTGATGTTGTCGAACGCTACTCGAATGATAACAACAAGACACTGAAgtataaccctctgtttat-ttttcagacctataattatgttttatt--attttattttttctttgaaagggagatggg---ggaggatttatt---ttctgaaatatca---------------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| |||||||   |||| ||  ||||||| |||||||| ||||||||||| || || ||| |||| ||||| ||||||||||| || ||||       |||  || | ||||   | |  || |  |   || ||   || |  |       | ||| |  | ||   | | | | ||      || || | | ||                                                                                         
GACTGTTTTGGGAGACCAATTGCGAGTGCTCCTGATGCATGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcctctgtttat-ttttcagacctataattatgttttattatttttttatttttttctctgagataggtgg-ctgggacgattt-----gttttctgagat-----------------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatg-ctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| || |||| | |||| ||||| ||||| |||||||||||||| |||||| | || ||  |||| |||||||| ||||||||  | |||| ||  |  ||        ||||  ||||| |  | |||| |      |  | |  |||| || |     |  || | ||    | |  | ||   |||| |    || |                                                                                      
GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAAgtaaggttccct--------ttttgcatcag-atacttagcctt----gtcttataaggagtatttagttttctcttatttttggttgaagttagtttcttatctgtttattt------------------------------------------------------------------------------------

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 3
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagt-cttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
|| |||||||  || || ||||||||||| || ||||||||||||||||| |||||  | | ||| |||||||| |||||||| || |||||||| | |  |    || ||||| || | | || ||    | ||    |  ||     | || ||  | || || | |  |  | ||  ||   | | || |  |                                                                                          
GACTGTTTTGGCCGGCCAATATCGAGTGCTCCAGATGCTTGGTTTGATGTAGTTGAAAGGTTCTCCAATGACAATAACAAGACACTAAAgtgagtgtataga----tgcttttcaattact-gtggtttggttttaaccttagtctctggcat-tgtcattg-tgtaataaagggcttagtatgctgcatggagga------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125178177|gb|EL196793.1|EL196793
EST:     CGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
genomic: CGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
EST: gi|116422598|gb|EG465190.1|EG465190
EST:     TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
genomic: TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
EST: gi|116471346|gb|EG513938.1|EG513938
EST:     TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
genomic: TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
EST: gi|116471526|gb|EG514118.1|EG514118
EST:     TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
genomic: TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
EST: gi|116471371|gb|EG513963.1|EG513963
EST:     TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
genomic: TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCT
EST: gi|124706009|gb|EH797411.1|EH797411
EST:     TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAGCAACAAGACGCTTAA                         GCGAACAACAAAAACTAGCAGGTG
genomic: TGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTAGCAGGTG
EST: gi|125158701|gb|EL187168.1|EL187168
EST:     GTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA                         GCGAACAACAAAAACTAAGCAGGTGCCTCAATTTGGGGTCCTACAATTATC
genomic: GTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgt ... ctctgtgcagGCGAACAACAAAAACTA-GCAGGTGCCTCAATTTGGGGTCCTACAATTATC