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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGGCACTTCAGGGTTCTACGTATCTGATGTCTTGCAATTTGATATGATTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGgtgagtttatttcagcgaatcctttgtttcatagtcatcaatatgggccattactcttgactttgttggttgctatgtgggattgtttttctggaaccag

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164060341|gb|ES199724.1|ES199724
EST:     CCGGTTGTGTTTGG                         TTGCAGTCACCTCTCAGACGGGTAGATTTAGTGAAGTCTGATAGAGCGGTT
genomic: CCGGTTGTGTTTGGgtgagtttat ... ctggaaccagTTGCAG-CACCTCTCAGACGGG-AGATTTAGTGAAGTCTGATAGAGCGGTT
EST: gi|86063836|gb|DR359593.1|DR359593
EST:     ATTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGG                         TTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA
genomic: ATTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGgtgagtttat ... ctggaaccagTTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA
EST: gi|164218357|gb|ES147341.1|ES147341
EST:     CCGGTTGTGTTTGG                         TTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA
genomic: CCGGTTGTGTTTGGgtgagtttat ... ctggaaccagTTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA
EST: gi|86063835|gb|DR359592.1|DR359592
EST:     ATTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGG                         TTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA
genomic: ATTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGgtgagtttat ... ctggaaccagTTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGA