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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAATGAGAACCATGACTTTTTGAAGTTGGCTATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAATGCTTAGCACTGACCTTGgtatgttggcttttgtccatgctgtgttgaggttttagagcttagtgaggtctttctgattatgaatgcagttgaatgactattttagtggaagtctttg...

Basic information

species Arabidopsis thaliana
transcript AT5G22780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCTATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAATGCTTAGCACTGACCTTGgtatgt---tggcttttgtccatgctgtgttgaggttttagagcttagtgaggtctttctgattatgaatgcagttgaatgactattttagtggaagtctttg---
||| ||||| || ||||||||| | | ||||||||||||||||||||| || ||||| |||||||| ||||| || ||||| ||  ||||| ||||  |||||||    |||         |  |||   |    | ||||| |||  |    || |  | || ||  |  || ||  |||  ||||    ||    | || |   
GCTTAATGAAAATCATGACTTTCTCAGGTTGGCTATAAATACAGTGCGCAATGATATCATTGGTCGTAATGAAACCTTCCAGTGTCTAGCATTGACTATGgtatggtaatggaaaaaacttaaactgccatcctttcttaga-cttgctct--tcatattaatcattta-acaatt--atgtatattcccctgtttcttttggtat

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCTATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAATGCTTAGCACTGACCTTGgtatgt---tggcttttgtccatgctgtgttgaggttttagagcttagtgaggtctttctgattatgaatgcagttgaatgactattttagtggaagtctttg
||| ||||| || ||||||||| | | ||||||||||||||||||||| || ||||| |||||||| ||||| || ||||| ||  ||||| ||||  |||||||    |||         |  |||   |    |  ||||  |        | ||  | |||    |   |  |  |  ||  | ||  |   ||| |   
GCTTAATGAAAATCATGACTTTCTCAGGTTGGCTATAAATACAGTGCGCAATGATATCATTGGTCGTAATGAAACCTTCCAGTGTCTAGCATTGACTATGgtatggtaatggaaaaaacttaaactgccatcctttcctagacttgctcttcatattaatcatttaagaattatgtatactaccctgtttctcttagtat---

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCTATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAATGCTTAGCACTGACCTTGgtatgttggcttttg-tccatgctgtgttgaggttttagagcttagtgaggtctttctgattatgaatgcagttgaatgactattttagtggaagtctttg----
 ||||||||||||||||||||||||| ||| || |||||||| ||||| || ||||||||||| || ||||| |||||||| ||||| ||  ||||  |||||||    | |    ||  |  |  ||    | ||||    ||  | |  | | | |  ||   |||   ||  |||     |    | |||| |||||     
ACTCAATGAGAACCATGACTTTTTGAGGTTAGCAATAAATACTGTGCGCAATGATATTATTGGCCGAAATGAAACTTTCCAGTGCTTGGCTTTGACTATGgtatgggaacatgaaatctcttttacgtctcagattta---tttgctta--tttatttattttcaaattatgtgaaattttgctggaggcggaattctttttcct