1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGGAAATCTGAAGAATCTCATCAGCTTGGATCTGTACAACAACAATCTTACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttctctcaaactctgatacagacacattgaacaatatactcaagacttctttaaaaattgcaaaatgatttatcaaatgttgagtaagagaacaagattgtttatgtgggttgttctccaatacctgattctttttttgtgatgcctcttcatacattgtctctctaagaaactgtttaatgtggcag
species | Arabidopsis thaliana |
transcript | AT5G21090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTACTACTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|124887996|gb|EH966898.1|EH966898
genomic: AGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGT-CT-CTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|116443563|gb|EG486155.1|EG486155
genomic: ACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|116456652|gb|EG499244.1|EG499244
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCEST: gi|124839282|gb|EH923721.1|EH923721
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGAEST: gi|301501628|gb|HO207168.1|HO207168
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGA
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|124975110|gb|EL048628.1|EL048628
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: TGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|124977932|gb|EL051201.1|EL051201
genomic: TGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGAEST: gi|125183061|gb|EL198170.1|EL198170
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGA
EST: GTTCCCACTTCTTTGGGAAAATTAGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|164065540|gb|EL992723.1|EL992723
genomic: GTTCCCACTTCTTTGGGAAAATT-GAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACAGGGATAGTTCCCACTTCTT-GGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGAACAACCGATTGACEST: gi|152038285|gb|BP812943.2|BP812943
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGA-CAACCGATTGAC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCEST: gi|116456643|gb|EG499235.1|EG499235
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGC
EST: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTT ACGGCTTAATGACAACCGATTGACCGGTCCAATCCC
genomic: ACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttct ... aatgtggcagACGGCTTAATGACAACCGATTGACCGGTCCAATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAAATCTGAAGAATCTCATCAGCTTGGATCTGTACAACAACAATCTTACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTgtaagtttctctcaaactctgatacagacacattgaacaatatactcaagacttctttaaaaattgcaaaatgatttatcaaatgttgagtaagagaacaagattgtttatgtgggttgttctccaatacctgattctttttttgtgatgcctcttcatacattgtctctctaagaaactgtttaatgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG