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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTGAAGGGAGAAGATATACAGTCTCTCAACTTGAAAAATCTGATGGCTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGgtatgtatacatttctacatacattcatacacatgaatatatttaacttcttatttggtctgcttggcacag

Basic information

species Arabidopsis thaliana
transcript AT5G20240.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080878|gb|DR376635.1|DR376635
EST:     CTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAG                         ATGGAGATCCTTATATCAAAGAGGAGAAAT
genomic: CTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGgtatgtatac ... cttggcacagATGGAGATCCTTATATCAAAGAGGAGAAAT
EST: gi|86074442|gb|DR370199.1|DR370199
EST:     CTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAG                         ATGGAGATCCTTATATCAAAAAGGAGAAAT
genomic: CTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGgtatgtatac ... cttggcacagATGGAGATCCTTATATCAAAGAGGAGAAAT