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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttacttgaatgctttattctttattaccatagtcgtagaccttagaaaaagggtaatgaatgtagtttggaactatgatttgaaaggtgatatt...

Basic information

species Arabidopsis thaliana
transcript AT5G19510.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164136334|gb|ES010098.1|ES010098
EST:     GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTG
genomic: GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTG
EST: gi|124816665|gb|EH901531.1|EH901531
EST:     CTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGAC
genomic: CTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGAC
EST: gi|125101876|gb|EL156857.1|EL156857
EST:     TTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGC
genomic: TTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGC
EST: gi|124831347|gb|EH915786.1|EH915786
EST:     CTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGATGATGATGATGACATGGNTCTCTTTGGTGAC
genomic: CTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGAC
EST: gi|125223452|gb|EL237537.1|EL237537
EST:     GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGAT
genomic: GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGAT
EST: gi|164011544|gb|ES123715.1|ES123715
EST:     GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTGC
genomic: GAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGC
EST: gi|125195681|gb|EL210635.1|EL210635
EST:     AGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGATGATG
genomic: AGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGATGATG
EST: gi|163991281|gb|ES161558.1|ES161558
EST:     GCTGCTGCTGCTCCAGCNGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGATGATGATGATG
genomic: GCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGATGATGATGATG
EST: gi|164032233|gb|ES152268.1|ES152268
EST:     GCTGTTGAAGCTGAG                         GCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGAC
genomic: GCTGTTGAAGCTGAGgtacctttac ... ttgtcaacagGCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGgtacctttacttgaatgctttattctttattaccatagtcgtagaccttagaaaaagggtaatgaatgtagtttggaactatgatttgaaaggtgatatt

- - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa