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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGATTGAGTTTTATAACGATTTTAATATCATTGCTCTTGGTCTTGATTCTATCGAAGCTCGCAAATACATCAATGGGGTAGCTTGTGGGTTTCTTGgtatgcaaattctttaacctttaatactttatccctcggctttttgaagttctctgtctgataatgtgcttgtgaaatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G19180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19180.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 3
AAAGAGATTGAGTTTTATAACGATTTTAATATCATTGCTCTTGGTCTTGATTCTATCGAAGCTCGCAAATACATCAATGGGGTAGCTTGTGGGTTTCTTGgtatgca--aattctttaacctttaatactttatccctcggctttttgaagttctctgtctgataatgtgcttgtgaaatgtag----------------
||||| ||||| ||||||||  |||| ||||| ||||| |||||||||||||| || || ||||| |  ||||| ||||  || |||||| | ||||| |||  | |  || |   || |   |  |    ||||       |   |     | |   |    |          ||| ||  |                 
AAAGACATTGAATTTTATAATCATTTCAATATTATTGCCCTTGGTCTTGATTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatcaactgcctatctcctggttggctatctaaaaattacgtagcactgttatttcagttgaagatgaatgatatccatcatgatatttcttgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072230|gb|DR367987.1|DR367987
EST:     TTCTATCGAAGCTCGCAA-TACATCAATGGGGTAGCTTGTGGGTTTCTTG                         AGTATAATGAAGATGATACTCC
genomic: TTCTATCGAAGCTCGCAAATACATCAATGGGGTAGCTTGTGGGTTTCTTGgtatgcaaat ... tgaaatgtagAGTATAATGAAGATGATACTCC