1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAACGAGGAAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatgtttttctcacctctatatatggttttgtgtcctttgaagaatgatgctagtaatttttggatgtgccttgttttcag
species | Arabidopsis thaliana |
transcript | AT5G18100.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACG GTGTTGCTGAAATCTTAATCAAAGACAAACATEST: gi|163971940|gb|ES152668.1|ES152668
genomic: AAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatg ... ttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT
EST: TGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACG GTGTTGCTGAAATCTTAATCAAAGACAAACAT
genomic: TGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatg ... ttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAACGAGGAAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatgtttttctcacctctatatatggttttgtgtcctttgaagaatgatgctagtaatttttggatgtgccttgttttcag
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG