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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgcttaaatacattttctcaacttgacttggtttttgaattcgggtgttccttctccctaattcaatcgaaaaatgctgccaaatag

Basic information

species Arabidopsis thaliana
transcript AT5G17770.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066404|gb|DR362161.1|DR362161
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066405|gb|DR362162.1|DR362162
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|47828476|gb|CK118160.1|CK118160
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066415|gb|DR362172.1|DR362172
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066417|gb|DR362174.1|DR362174
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGGAGATGCGT
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGG-AGATGCGT
EST: gi|86066418|gb|DR362175.1|DR362175
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066449|gb|DR362206.1|DR362206
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066416|gb|DR362173.1|DR362173
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTG
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTG
EST: gi|86066431|gb|DR362188.1|DR362188
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066447|gb|DR362204.1|DR362204
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066445|gb|DR362202.1|DR362202
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066440|gb|DR362197.1|DR362197
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066414|gb|DR362171.1|DR362171
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066432|gb|DR362189.1|DR362189
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGH-GCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066435|gb|DR362192.1|DR362192
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066403|gb|DR362160.1|DR362160
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAAGACGGATGTCTCATCATTTCAGGGAGATGCGGTGTTGG
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCG-TGTTGG
EST: gi|86066411|gb|DR362168.1|DR362168
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066437|gb|DR362194.1|DR362194
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066408|gb|DR362165.1|DR362165
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|124742581|gb|EH833743.1|EH833743
EST:     CGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|125013320|gb|EL085589.1|EL085589
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066446|gb|DR362203.1|DR362203
EST:     CCCGACTACGTTAGACTCTGACGTTGGAACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCGACTACGTTAGACTCTGACGTTGGA-CGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066421|gb|DR362178.1|DR362178
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAA
EST: gi|86066428|gb|DR362185.1|DR362185
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066425|gb|DR362182.1|DR362182
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066434|gb|DR362191.1|DR362191
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAARGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066412|gb|DR362169.1|DR362169
EST:     CCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTTAAG                         ATGTATCCGCAAG-ACGGGATGTCTCATCATTTTCAGGGAGATGCGTGTT
genomic: CCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATT-AAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGG-ATGTCTCATCATTT-CAGGGAGATGCGTGTT
EST: gi|86066436|gb|DR362193.1|DR362193
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066442|gb|DR362199.1|DR362199
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATT
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATT
EST: gi|86066407|gb|DR362164.1|DR362164
EST:     CCCGACTACGTTAGACTCTGACGGTTGGACGTTTCGAACTTGTCATTAAS                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCGACTACGTTAGACTCTGACG-TTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066419|gb|DR362176.1|DR362176
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTNATTAAG                         ATGTATCCCGCAAGGACGGATGTCTCATCATTTC
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCC-GCAAGGACGGATGTCTCATCATTTC
EST: gi|86066448|gb|DR362205.1|DR362205
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|125248813|gb|EL262898.1|EL262898
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGT
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGT
EST: gi|86066451|gb|DR362208.1|DR362208
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGA
EST: gi|86066413|gb|DR362170.1|DR362170
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAG-ACGGATGTCTCATCATTTCAGGGAGATGCGTGTT
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTT
EST: gi|86066430|gb|DR362187.1|DR362187
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATG
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATG
EST: gi|86066422|gb|DR362179.1|DR362179
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTG
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTG
EST: gi|86066439|gb|DR362196.1|DR362196
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATC-GCAAG
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAG
EST: gi|86066441|gb|DR362198.1|DR362198
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATT
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATT
EST: gi|86066438|gb|DR362195.1|DR362195
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|124819027|gb|EH903893.1|EH903893
EST:     CCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAAG                         ATGTATCCGCAAGGACGGATGTCTC
genomic: CCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAA-Ggtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTC
EST: gi|86082753|gb|DR378512.1|DR378512
EST:     GACTACGGTTAGACTCTAACGTTGGACGTTTCGAACTTGTCATTAAN                         ATGTATCCGCAAGGNCGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGN
genomic: GACTAC-GTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGG-
EST: gi|86066444|gb|DR362201.1|DR362201
EST:     CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
EST: gi|86066429|gb|DR362186.1|DR362186
EST:     CCCCGACTACGTTAGACTCTGACGTTGGASGTTTCGAACTTGTCATTAAG                         ATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA
genomic: CCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGgtatatgctt ... tgccaaatagATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGA